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Updated in [August 18th, 2023]

Skills and Knowledge:
By taking this course, students will acquire knowledge and skills related to Molecular Dynamics Simulation, including an understanding of why different parameters exist in the simulation, how to install and operate the Gromacs software, and how to interpret the results of the simulation. Additionally, students will gain an understanding of the applications of Molecular Dynamics Simulation, such as its use in studying biomolecules and modeling biological processes.
Professional Growth:
This course contributes to professional growth by providing a comprehensive introduction to Molecular Dynamics Simulation and the Gromacs software. Students will gain an understanding of the different parameters of the software and why they are necessary for the simulation. Additionally, the course will provide insight into the applications of Molecular Dynamics Simulation, such as its use in studying biomolecules and modeling biological processes. By the end of the course, students will have a better grasp of the concepts and techniques involved in Molecular Dynamics Simulation, allowing them to apply their knowledge in a professional setting.
Further Education:
This course is suitable for preparing further education in Molecular Dynamics Simulation. It provides a comprehensive introduction to the software, including how to install, operate and understand the different parameters. It also provides an explanation of why different parameters exist in the simulation and why the software was selected. By the end of the course, students will have a good understanding of the science of Molecular Dynamics Simulation and how it can be applied to biological macromolecules. This knowledge will be beneficial for further education in the field.

Course Syllabus

Introduction

Commands on Gromacs

Energy Minimization